About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13251FCH AND DOUBLE SH3 DOMAINS PROTEIN
HS13252COLLAGEN ALPHA
HS13253
HS13254
HS13255OLFACTOMEDIN-RELATED
HS13256UNCHARACTERIZED
HS1325730S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR
HS13258UNCHARACTERIZED
HS13259TUBULIN POLYGLUTAMYLASE
HS13260TUBULIN POLYGLUTAMYLASE
HS13261
HS13262RAS GTPASE-ACTIVATING PROTEINS
HS13263FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS13264NETRIN/LAMININ-RELATED
HS13265ALLOGRAFT INFLAMMATORY FACTOR-1
HS13266MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS13267OSMOSIS RESPONSIVE FACTOR
HS13268
HS13269G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS13270MITOGEN-ACTIVATED PROTEIN KINASE
HS13271TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
HS13272AF4/FMR2 FAMILY MEMBER
HS13273
HS13274MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS13275KELCH PROTEIN
HS13276
HS13277SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE
HS13278HSDA/SDA1-RELATED
HS13279SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
HS13280SUGAR TRANSPORTER
HS13281CELL ADHESION MOLECULE
HS13282TRANSFORMING GROWTH FACTOR ALPHA
HS13283UNCHARACTERIZED
HS13284CRUMBS FAMILY MEMBER
HS13285RGPR-RELATED
HS13286E3 UBIQUITIN-PROTEIN LIGASE UBR5
HS1328760S RIBOSOMAL PROTEIN L28
HS13288PHOSDUCIN-LIKE PROTEIN
HS13289PROSTAGLANDIN G/H SYNTHASE
HS1329060S RIBOSOMAL PROTEIN L37
HS13291ALPHA-2,8-SIALYLTRANSFERASE
HS13292PROTEIN CBG12474
HS13293PROTEIN CBG12474
HS13294E3 UBIQUITIN-PROTEIN LIGASE RNF165
HS13295
HS13296ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
HS13297
HS13298DNAJ HOMOLOG SUBFAMILY C MEMBER
HS13299THROMBOSPONDIN
HS13300RE48077P
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