About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13201UBIQUINONE BIOSYNTHESIS PROTEIN
HS13202TNF RECEPTOR ASSOCIATED FACTOR
HS13203F-BOX/WD REPEAT-CONTAINING PROTEIN 5
HS13204PR DOMAIN ZINC FINGER PROTEIN
HS13205KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS13206ARGININOSUCCINATE SYNTHASE
HS13207SURFEIT LOCUS PROTEIN
HS13208UPF0184 PROTEIN C9ORF16
HS13209-
HS13210DYNAMIN
HS13211GOLGIN SUBFAMILY A MEMBER-RELATED
HS13212GOLGIN SUBFAMILY A MEMBER-RELATED
HS13213HEAT SHOCK PROTEIN 70KDA
HS13214RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS
HS13215REGULATOR OF G-PROTEIN SIGNALING 3
HS13216REGULATOR OF G-PROTEIN SIGNALING 3
HS13217REGULATOR OF G-PROTEIN SIGNALING 3
HS13218ZINC FINGER PROTEIN
HS13219LAMGL DOMAIN-CONTAINING PROTEIN
HS13220-
HS13221TRIPARTITE MOTIF-CONTAINING PROTEIN 2-LIKE PROTEIN
HS13222-
HS13223MYOSIN LIGHT CHAIN 1, 3
HS13224MACPF DOMAIN-CONTAINING PROTEIN
HS13225ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS13226NUCLEOTIDE KINASE
HS13227LD33695P
HS13228LIM/HOMEOBOX PROTEIN LHX
HS13229TRANSMEMBRANE PROTEIN 250
HS13230AGAP004733-PA
HS13231NUCLEAR PORE COMPLEX PROTEIN NUP
HS13232PROTEIN FAM78A
HS13233SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE
HS13234BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2
HS13235
HS13236ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1
HS13237SERINE/THREONINE PROTEIN KINASE
HS13238TRIMERIC INTRACELLULAR CATION CHANNEL
HS13239ZINC FINGER PROTEIN
HS13240UV EXCISION REPAIR PROTEIN RAD23
HS13241KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS13242ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS13243SYNUCLEIN
HS13244NOP14
HS13245ADDUCIN
HS13246TRANSLATION ELONGATION FACTOR G-RELATED
HS13247RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOG
HS13248TORSIN
HS13249EGF-LIKE-DOMAIN, MULTIPLE 7, 8
HS132501-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
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