About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13301INHIBITORY SYNAPTIC FACTOR 2A-RELATED
HS13302PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS13303BNIP - RELATED
HS13304GTP-BINDING PROTEIN ALPHA SUBUNIT
HS13305GTP-BINDING PROTEIN ALPHA SUBUNIT
HS13306KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS13307TYROSINE-PROTEIN KINASE RECEPTOR
HS13308E3 UBIQUITIN-PROTEIN LIGASE KCMF1
HS13309INTEGRIN ALPHA
HS13310TRANS-GOLGI PROTEIN GMX33
HS13311PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS13312ATP-DEPENDENT RNA HELICASE
HS13313ATP-DEPENDENT RNA AND DNA HELICASE
HS13314LIPID PHOSPHATE PHOSPHATASE
HS13315REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13316CHONDROITIN SYNTHASE
HS13317NUCLEOREDOXIN-LIKE PROTEIN 2
HS13318GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
HS13319
HS13320CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
HS13321EXPRESSED PROTEIN
HS13322COLLAGEN ALPHA
HS13323MYOMEGALIN
HS13324NUCLEOPORIN NUP188 HOMOLOG
HS13325TRANSMEMBRANE PROTEIN 15-RELATED
HS13326PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
HS13327-
HS13328UNCHARACTERIZED
HS13329URIDINE KINASE
HS13330GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS13331NETRIN/LAMININ-RELATED
HS13332PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
HS13333MITOGUARDIN
HS13334-
HS13335-
HS13336CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
HS13337FI04487P
HS13338FI04487P
HS13339ANILLIN/RHOTEKIN RTKN
HS13340RBP-RELATED
HS13341REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13342AQUAPORIN OR AQUAGLYCEROPORIN RELATED
HS13343NETRIN RECEPTOR UNC5
HS13344TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B
HS13345IMPORTIN BETA
HS13346PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS13347
HS13348TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER
HS13349ANKYRIN REPEAT FAMILY A
HS13350SERINE/ARGININE-RICH SPLICING FACTOR
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