About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13401M-PHASE PHOSPHOPROTEIN 9
HS13402DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1
HS13403STRAWBERRY NOTCH-RELATED
HS13404N-LYSINE METHYLTRANSFERASE KMT5A
HS13405FI04487P
HS13406SURFEIT LOCUS PROTEIN 6
HS13407SURFEIT LOCUS PROTEIN
HS13408RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
HS13409UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS13410MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
HS13411RAP GTPASE-ACTIVATING PROTEIN
HS13412PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
HS13413UNCHARACTERIZED
HS13414PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2, MITOCHONDRIAL
HS13415MICROTUBULE-ASSOCIATED PROTEIN
HS13416DNAJ HOMOLOG SUBFAMILY C MEMBER 21
HS13417ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
HS13418HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS13419ALPHA-PROTEIN KINASE 2-RELATED
HS13420ALPHA-PROTEIN KINASE 2-RELATED
HS13421O-ACYLTRANSFERASE
HS13422ZINC FINGER PROTEIN 532-RELATED
HS13423GASTRIN-RELEASING PEPTIDE
HS13424HOMEOBOX PROTEIN, PUTATIVE-RELATED
HS13425COMPLEXIN
HS13426VESICULAR MANNOSE-BINDING LECTIN
HS13427COLLAGEN
HS13428I[[H]] CHANNEL, ISOFORM E
HS13429REGULATOR OF CHROMOSOME CONDENSATION
HS13430BTK-BINDING PROTEIN-RELATED
HS13431ENDOTHELIAL CELL-SPECIFIC MOLECULE 1 ESM-1
HS13432SPERMATHECAL PHYSIOLOGY VARIANT
HS13433UPF0729 PROTEIN C18ORF32
HS13434CELL CYCLE CHECKPOINT PROTEIN RAD1
HS13435RIBOSOME BIOGENESIS PROTEIN BRIX
HS13436DYMECLIN
HS13437
HS13438SMAD
HS13439EIF4G DOMAIN PROTEIN
HS13440REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13441AGAP004733-PA
HS13442G-PROTEIN COUPLED RECEPTOR
HS13443SHC TRANSFORMING PROTEIN
HS13444SEMAPHORIN
HS13445HOMEOBOX PROTEIN NKX
HS13446ABRAXAS FAMILY MEMBER
HS1344730S RIBOSOMAL PROTEIN S18
HS13448DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
HS13449HEPARANASE
HS13450SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED
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