About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13501AGGRECAN/VERSICAN PROTEOGLYCAN
HS13502CALCIUM BINDING PROTEIN
HS13503AGGRECAN/VERSICAN PROTEOGLYCAN
HS13504
HS13505SERUM RESPONSE FACTOR HOMOLOG
HS13506ARRESTIN DOMAIN CONTAINING PROTEIN
HS13507C2 DOMAIN-CONTAINING PROTEIN
HS13508SEPTIN
HS13509CLAUDIN
HS13510ACYL-COA DEHYDROGENASE
HS13511BETA/GAMMA CRYSTALLIN
HS13512BETA/GAMMA CRYSTALLIN
HS13513G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
HS13514MYOSIN HEAVY CHAIN, NON-MUSCLE
HS13515PROTEIN CBR-CLEC-78
HS13516ANION EXCHANGE PROTEIN
HS13517SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
HS13518
HS13519G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
HS13520SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2
HS13521N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
HS13522MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S24
HS13523NUCLEAR MOVEMENT PROTEIN NUDC
HS13524SERINE/THREONINE-PROTEIN KINASE
HS13525POLY ADP-RIBOSE GLYCOHYDROLASE
HS13526
HS13527ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
HS13528L1 TRANSPOSABLE ELEMENT-RELATED
HS13529PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS13530PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS13531AGAP008228-PA
HS13532ATP-DEPENDENT RNA HELICASE RHLE-RELATED
HS13533REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13534PROTEASE M14 CARBOXYPEPTIDASE
HS13535ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
HS13536SEC14 RELATED PROTEIN
HS13537METAL TRANSPORTER CNNM
HS13538METAL TRANSPORTER CNNM
HS13539PUR-TRANSCRIPTIONAL ACTIVATOR
HS13540HOMEO BOX HB9 LIKE A-RELATED
HS13541GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS13542ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
HS13543OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS13544OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS13545PHOSPHATIDYLINOSITOL KINASE
HS13546SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED
HS13547VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL
HS13548TORSIN
HS13549BRCA1-ASSOCIATED PROTEIN
HS13550N-TERMINAL ACETYLTRANSFERASE-RELATED
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