About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13601NACHT, LRR AND CARD DOMAINS-CONTAINING
HS13602UNCHARACTERIZED
HS13603HYPOTHETICAL PROTEIN LOC100359752
HS13604CYTOCHROME B5
HS13605PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
HS13606PROTEIN C6ORF149
HS13607
HS13608
HS13609NEURITIN-RELATED
HS13610PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS13611
HS13612RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1
HS13613RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1
HS13614COLON CANCER-ASSOCIATED PROTEIN MIC1
HS13615SERINE/THREONINE-PROTEIN KINASE RIO1
HS13616ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
HS13617ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE
HS13618VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS13619VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS13620REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13621TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
HS13622LASP
HS13623NEBULIN
HS13624PROTEASOME REGULATOR PA28
HS13625RING FINGER PROTEIN 31-RELATED
HS13626INTERFERON REGULATORY FACTOR
HS13627
HS13628ER MEMBRANE PROTEIN COMPLEX
HS13629ARYLACETAMIDE DEACETYLASE
HS13630TUMOR NECROSIS FACTOR FAMILY MEMBER
HS13631
HS13632PDF RECEPTOR-LIKE PROTEIN-RELATED
HS13633DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED
HS13634LUPUS LA PROTEIN-RELATED
HS13635
HS13636T-LYMPHOCYTE ACTIVATION ANTIGEN
HS13637T-LYMPHOCYTE ACTIVATION ANTIGEN
HS13638NEUROTRANSMITTER GATED ION CHANNEL
HS13639PROTEIN CIP2A
HS13640SH2 DOMAIN-CONTAINING PROTEIN
HS13641LIPASE
HS13642THRAP3/BCLAF1
HS13643
HS13644MICROTUBULE-ASSOCIATED PROTEIN
HS13645EIF-1A
HS13646ZINC FINGER PROTEIN
HS13647
HS13648PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
HS13649
HS13650ACYL-COA THIOESTERASE
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