About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13701CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS
HS13702TOLL-LIKE RECEPTOR
HS13703SERINE/THREONINE PROTEIN KINASE
HS13704SH3 DOMAIN-CONTAINING
HS13705REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13706N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
HS13707TYROSINE-PROTEIN KINASE
HS13708
HS13709COP9 SIGNALOSOME COMPLEX SUBUNIT 9
HS13710OTOSPIRALIN
HS13711APOLIPOPROTEIN D
HS13712PDZ DOMAIN-CONTAINING PROTEIN
HS13713PDZ DOMAIN-CONTAINING PROTEIN
HS13714UNCHARACTERIZED
HS13715THREONINE SYNTHASE-LIKE 1
HS13716BRYOPORIN
HS13717G-PROTEIN COUPLED RECEPTOR 158-RELATED
HS13718GEM-ASSOCIATED PROTEIN 6
HS13719ANNEXIN
HS13720COILED-COIL DOMAIN-CONTAINING PROTEIN 106
HS13721AGAP011099-PA
HS13722GLUTAMATE DECARBOXYLASE-RELATED
HS13723NEL HOMOLOG
HS13724GROWTH FACTOR RECEPTOR-BOUND PROTEIN
HS13725SELENOPROTEIN O
HS13726SELENOPROTEIN O
HS13727GERANYLGERANYL PYROPHOSPHATE SYNTHASE
HS13728SH3 DOMAIN-CONTAINING
HS13729ABL INTERACTOR FAMILY MEMBER
HS13730ACYL-COA-BINDING PROTEIN, ACBP
HS13731SERINE/THREONINE-PROTEIN KINASE
HS13732METALLOPROTEASE M41 FTSH
HS13733FATTY ACID SYNTHASE
HS13734POLYKETIDE SYNTHASE 44-RELATED
HS13735PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS13736CARBONIC ANHYDRASE
HS13737DNA REPAIR PROTEIN RAD51 HOMOLOG 2
HS13738RIBOSOMAL BIOGENESIS FACTOR
HS13739TRANSPOSABLE ELEMENT-RELATED
HS13740REVERSE TRANSCRIPTASES
HS13741HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
HS13742CELL DIVISION PROTEIN KINASE
HS13743RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS13744MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1
HS13745MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
HS13746TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER
HS13747ADP-RIBOSYL CYCLASE
HS13748ADP-RIBOSYL CYCLASE
HS13749INOSITOL MONOPHOSPHATASE
HS13750INOSITOL MONOPHOSPHATASE
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