About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13851SI:CH211-161H7.5-RELATED
HS13852DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
HS13853HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
HS13854OTU DOMAIN CONTAINING PROTEIN
HS13855P140CAP/SNIP-RELATED
HS13856TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
HS13857UBIQUITIN-ACTIVATING ENZYME E1
HS13858CELL ADHESION MOLECULE
HS13859RNA PROCESSING PROTEIN LD23810P
HS13860OVOCHYMASE-RELATED
HS13861TRANSIENT RECEPTOR POTENTIAL CHANNEL
HS13862CARBOHYDRATE SULFOTRANSFERASE
HS13863EPM2A-INTERACTING PROTEIN 1
HS13864GH11358P
HS13865CXC DOMAIN-CONTAINING PROTEIN-RELATED
HS13866PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
HS13867PHOSPHOLIPID SCRAMBLASE-RELATED
HS13868ZINC FINGER PROTEIN ZIC AND GLI
HS13869ZINC FINGER PROTEIN ZIC AND GLI
HS13870CELL ADHESION MOLECULE
HS13871PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
HS13872GLYCOGENIN SUBFAMILY MEMBER
HS13873SH2-SH3 ADAPTOR PROTEIN-RELATED
HS13874CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
HS13875ACYL-MALONYL CONDENSING ENZYME-RELATED
HS13876GOLGI REASSEMBLY STACKING PROTEIN GRASP
HS13877TGF-BETA INDUCED APOPTOSIS PROTEIN
HS13878OS06G0237300 PROTEIN
HS13879SOLUTE CARRIER FAMILY 22 MEMBER
HS13880STERILE20-LIKE KINASE, ISOFORM B-RELATED
HS13881MYD88
HS13882CRYPTOCHROME
HS13883MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
HS13884
HS13885DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1
HS13886PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS13887VILLIN
HS13888DULLARD PROTEIN PHOSPHATASE
HS13889GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
HS13890GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
HS13891ACYLTRANSFERASE
HS13892KELCH PROTEIN
HS13893ZINC FINGER PROTEIN
HS13894PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS13895LONGIN DOMAIN-CONTAINING PROTEIN
HS13896PDF RECEPTOR-LIKE PROTEIN-RELATED
HS13897
HS13898SI:CH211-196P9.1-RELATED
HS13899NANOS PROTEIN
HS13900IMPORTIN ALPHA
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