About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13901GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN
HS13902COILED-COIL DOMAIN-CONTAINING PROTEIN 58
HS13903CYSTATIN FAMILY MEMBER
HS13904THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED
HS13905ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS13906PALMITOYLTRANSFERASE ZDHHC16
HS13907QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2
HS13908UNCHARACTERIZED
HS13909UNCHARACTERIZED
HS13910V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A
HS13911N-ALPHA-ACETYLTRANSFERASE
HS13912BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3
HS13913PROTEIN SIDEKICK
HS13914
HS13915SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1
HS13916SHISA
HS13917PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS13918SI:CH211-59O9.10
HS13919CELL DIVISION PROTEIN KINASE
HS13920WASP-1
HS13921G-PROTEIN COUPLED RECEPTOR
HS13922UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS1392360S RIBOSOMAL PROTEIN L21
HS13924ZINC FINGER PROTEIN
HS13925MULTIPLE PDZ DOMAIN PROTEIN
HS13926RCG42593, ISOFORM CRA_A
HS13927PROTEIN ZERKNUELLT 1-RELATED
HS139282-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED
HS13929TYROSINE-PROTEIN KINASE RECEPTOR
HS13930DEADENYLATION COMPLEX SUBUNIT PAN3
HS13931TYROSINE-PROTEIN KINASE RECEPTOR
HS13932ACROSIN-RELATED
HS13933RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4
HS13934EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
HS13935CALPONIN
HS13936MYCOPHENOLIC ACID ACYL-GLUCURONIDE ESTERASE, MITOCHONDRIAL
HS13937YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
HS13938BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS13939ARMADILLO REPEAT-CONTAINING PROTEIN 1
HS13940PROTEIN OF UNKNOWN FUNCTION DUF729
HS13941CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS13942E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS13943CORTICOLIBERIN/UROCORTIN
HS13944RIBOSOME BIOGENESIS REGULATORY PROTEIN
HS13945
HS13946FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
HS13947RIBOSOMAL PROTEIN S6 KINASE
HS13948DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
HS13949BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS13950LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
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