About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14001WD40 REPEAT PF20
HS14002
HS14003MYELIN-ASSOCIATED OLIGODENDROCYTIC BASIC PROTEIN MOBP -RELATED
HS14004PROLACTIN-RELEASING PEPTIDE
HS14005UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
HS14006UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
HS140075-OXOPROLINASE RELATED
HS14008FORKHEAD BOX PROTEIN H1
HS14009PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
HS14010ALANINE AMINOTRANSFERASE
HS14011PROTEIN DISULFIDE ISOMERASE
HS14012POLYCYSTIN-1
HS14013FLJ44216 PROTEIN-RELATED
HS14014PHD FINGER PROTEINS
HS14015
HS14016COMM DOMAIN-CONTAINING PROTEIN 3
HS14017RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
HS14018SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING
HS14019METHIONINE SULFOXIDE REDUCTASE
HS14020PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
HS14021ARMADILLO REPEAT-CONTAINING PROTEIN 3
HS14022COMPLEMENT COMPONENT C8 GAMMA CHAIN
HS14023LIPOCALIN
HS14024PIKACHURIN-LIKE PROTEIN
HS14025PIKACHURIN-LIKE PROTEIN
HS14026CEREBELLIN-RELATED
HS14027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14028THIAMIN PYROPHOSPHOKINASE
HS14029
HS14030SEC61 GAMMA SUBUNIT
HS14031PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS14032PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS14033TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 11A
HS14034RAB11-BINDING PROTEIN RELCH
HS14035PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
HS14036G-PROTEIN COUPLED RECEPTOR
HS14037NUCLEAR HORMONE RECEPTOR
HS14038POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN 1-RELATED
HS14039POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN 1-RELATED
HS14040PEROXISOME BIOGENESIS FACTOR 2
HS14041ZINC FINGER HOMEOBOX PROTEIN
HS14042BETA-1,4-GALACTOSYLTRANSFERASE
HS14043UNCHARACTERIZED
HS14044REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14045MYOTUBULARIN-RELATED
HS14046NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1
HS14047ROPPORIN-1-LIKE PROTEIN
HS14048ANKYRIN REPEAT CONTAINING
HS14049DEATH-ASSOCIATED PROTEIN 1
HS14050PLAKOPHILLIN-RELATED
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