About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14101SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
HS14102LEUCINE RICH REPEAT FAMILY PROTEIN
HS14103SH3 DOMAIN-CONTAINING
HS14104ADP-RIBOSYLGLYCOHYDROLASE
HS14105
HS14106PROTEIN VAV
HS14107NETRIN/LAMININ-RELATED
HS14108PROTEIN ARGININE N-METHYLTRANSFERASE
HS14109UNCHARACTERIZED
HS14110NACHT, LRR AND CARD DOMAINS-CONTAINING
HS14111COLLAGEN ALPHA
HS14112OLFACTOMEDIN-RELATED
HS141133-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
HS14114ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
HS14115ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
HS14116SPERMATHECAL PHYSIOLOGY VARIANT
HS14117ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
HS14118ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
HS14119GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER
HS14120NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2
HS14121DIPHTHAMIDE BIOSYNTHESIS PROTEIN
HS14122UNCHARACTERIZED
HS14123R-SEVEN BINDING PROTEIN (R7BP) HOMOLOG
HS14124KINESIN-RELATED
HS1412530S RIBOSOMAL PROTEIN S10 FAMILY MEMBER
HS14126MASK PROTEIN
HS14127ARYL HYDROCARBON RECEPTOR
HS14128PIG-M MANNOSYLTRANSFERASE
HS14129SERINE PROTEASE INHIBITOR, SERPIN
HS14130PX SERINE/THREONINE KINASE PXK
HS14131REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14132AGOUTI RELATED
HS14133HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS14134REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
HS14135COPINE
HS14136COPINE
HS14137COPINE
HS14138ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
HS14139WD40 REPEAT PROTEIN 12, 37
HS14140EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
HS14141
HS14142PHOSPHOFRUCTOKINASE
HS14143REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14144KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS14145FRIZZLED
HS14146CONNEXIN
HS14147CYCLIN Y, ISOFORM A
HS14148CULLIN
HS14149PARTITIONING DEFECTIVE 3 RELATED
HS14150ENZYMATIC POLYPROTEIN-RELATED
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