About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14251GTPASE, IMAP FAMILY MEMBER-RELATED
HS14252GTPASE, IMAP FAMILY MEMBER-RELATED
HS14253GTPASE, IMAP FAMILY MEMBER-RELATED
HS14254BETA-ALA-HIS DIPEPTIDASE
HS14255ZINC FINGER PROTEIN
HS14256T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL
HS14257CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
HS14258CALCIUM HOMEOSTASIS MODULATOR PROTEIN
HS14259RWD DOMAIN-CONTAINING PROTEIN
HS14260OXYSTEROL-BINDING PROTEIN-RELATED
HS14261SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS14262PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1
HS14263RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN
HS14264DUAL SPECIFICITY PROTEIN KINASE
HS14265PROTOPORPHYRINOGEN OXIDASE
HS14266TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED
HS14267
HS14268SPERM SPECIFIC ANTIGEN 2-RELATED
HS14269OVOCHYMASE-RELATED
HS14270PALMDELPHIN
HS14271PALMDELPHIN
HS14272UNCHARACTERIZED
HS14273RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4
HS14274COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 7
HS14275ZINC FINGER PROTEIN
HS14276CALPONIN
HS14277SERINE-THREONINE PROTEIN KINASE
HS14278DUDULIN-RELATED
HS14279GLYCOSYL TRANSFERASE-RELATED
HS14280INTERFERON/INTERLEUKIN RECEPTOR
HS14281ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
HS14282CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
HS14283DELTEX-RELATED
HS14284CEREBELLIN-RELATED
HS14285-
HS14286
HS14287TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
HS14288ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 2
HS14289COLLAGEN ALPHA
HS14290COLLAGEN ALPHA
HS14291
HS14292V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS14293REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14294-
HS14295SERINE/THREONINE-PROTEIN KINASE 17
HS14296HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS14297LIPID PHOSPHATE PHOSPHATASE
HS14298LIPID PHOSPHATE PHOSPHATASE
HS14299SORTING NEXIN-4
HS14300REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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