About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13951EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
HS13952CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN
HS13953GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS13954PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
HS13955DEP DOMAIN PROTEIN
HS13956SIMILAR TO HYPOTHETICAL PROTEIN
HS13957N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
HS13958ORGANIC ANION TRANSPORTER
HS13959NUCLEAR RECEPTOR COACTIVATOR
HS13960PR DOMAIN ZINC FINGER PROTEIN
HS13961TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN
HS13962XK-RELATED PROTEIN
HS13963EYES ABSENT
HS13964BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS13965TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
HS13966VOLTAGE-GATED POTASSIUM CHANNEL
HS13967MATERNAL EFFECT PROTEIN STAUFEN
HS13968TELOMERIC REPEAT-BINDING FACTOR 1 TERF1
HS13969
HS1397060S RIBOSOMAL PROTEIN L7
HS13971PKSB
HS13972UBIQUITIN-CONJUGATING ENZYME E2
HS13973ELONGIN-C
HS13974GH28348P
HS13975GDAP1, ISOFORM A
HS13976CYSTEINE-RICH SECRETORY PROTEIN-RELATED
HS13977LCCL DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G08630)
HS13978DOCKING PROTEIN RELATED
HS13979CD226 ANTIGEN
HS13980ROTATIN
HS13981PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS13982CEREBELLIN-RELATED
HS13983F-BOX ONLY PROTEIN 15
HS13984OVOCHYMASE-RELATED
HS13985MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21
HS13986
HS13987SEMAPHORIN
HS13988SSM4 PROTEIN
HS13989NITRIC OXIDE SYNTHASE-RELATED
HS13990CHAPERONIN
HS13991
HS13992N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
HS13993PALMITOYLTRANSFERASE ZDHHC16
HS13994ORGANIC SOLUTE TRANSPORTER-RELATED
HS13995PYRUVATE DEHYDROGENASE KINASE
HS13996CYTIDYLYLTRANSFERASE
HS13997DNA POLYMERASE ALPHA CATALYTIC SUBUNIT
HS13998HOMEOBOX PROTEIN ARISTALESS
HS13999HOMOGENTISATE 1,2-DIOXYGENASE
HS14000NADH-UBIQUINONE OXIDOREDUCTASE B15 SUBUNIT
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