About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13751CADHERIN-23
HS13752CADHERIN-23
HS13753CADHERIN-23
HS13754-
HS13755PROTEIN DISULFIDE-ISOMERASE TMX3
HS13756PX DOMAIN-CONTAINING PROTEIN 1
HS13757DUAL SPECIFICITY PROTEIN KINASE
HS13758TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
HS13759CELL ADHESION MOLECULE
HS13760LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE
HS13761DNAJ HOMOLOG SUBFAMILY C MEMBER 13
HS13762TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS13763YALI0A06105P
HS13764DNA REPLICATION REGULATOR DPB11-RELATED
HS13765TRANSMEMBRANE PROTEIN 108
HS13766PROTEIN CDV3 HOMOLOG
HS13767CENTROMERE PROTEIN E
HS13768
HS13769DISCS LARGE
HS13770POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED
HS13771
HS13772SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
HS13773
HS13774
HS13775
HS13776RETINOIC ACID RECEPTOR RESPONDER PROTEIN 2
HS13777RETINOIC ACID RECEPTOR RESPONDER PROTEIN 2
HS13778ANION EXCHANGE PROTEIN
HS13779UBX DOMAIN-CONTAINING PROTEIN 1
HS13780ATP-BINDING TRANSPORT PROTEIN-RELATED
HS13781CHONDROITIN SYNTHASE
HS13782SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
HS13783NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
HS13784ASAP FAMILY MEMBER
HS13785TRANSLATION FACTOR
HS13786UNCHARACTERIZED
HS13787MYC PROTO-ONCOGENE
HS13788
HS13789PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG
HS13790OTU DEUBIQUITINASE WITH LINEAR LINKAGE-SPECIFICITY A-RELATED
HS13791PROTEIN YAE1 HOMOLOG
HS13792
HS13793
HS13794VACUOLAR PROTEIN SORTING VPS41
HS13795N-ACETYLTRANSFERASE ECO
HS13796RETINITIS PIGMENTOSA 1 PROTEIN
HS13797SOX TRANSCRIPTION FACTOR
HS13798SOX TRANSCRIPTION FACTOR
HS1379950S RIBOSOMAL PROTEIN L15
HS13800LYSOPHOSPHOLIPASE-RELATED
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