About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14051REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14052
HS14053C2H2 ZINC FINGER CGI-62-RELATED
HS14054DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
HS14055BETA-CAROTENE DIOXYGENASE
HS14056CT120 PROTEIN
HS14057PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3
HS14058UNCHARACTERIZED
HS14059MITOGEN-ACTIVATED PROTEIN KINASE
HS14060TRANSMEMBRANE PROTEIN 14, 15
HS14061TRANSCRIPTION FACTOR AP-2
HS14062OROFACIAL CLEFT 1 CANDIDATE GENE 1 PROTEIN
HS14063SOLUTE CARRIER FAMILY 35 MEMBER B
HS14064EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1
HS14065BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 5
HS14066PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
HS14067TGF-BETA FAMILY
HS14068
HS14069HISTONE H2A
HS14070PEFLIN
HS14071
HS14072
HS14073
HS14074IMPORTIN BETA
HS14075HOMEOBOX PROTEIN
HS14076TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
HS14077FLAP ENDONUCLEASE FAMILY MEMBER
HS14078SI:CH211-171H4.5-RELATED
HS14079PHOSPHOENOLPYRUVATE CARBOXYKINASE
HS14080PROTEASOME REGULATOR PA28
HS14081DDB1- AND CUL4-ASSOCIATED FACTOR 11
HS14082THIAMINE-TRIPHOSPHATASE
HS14083ZINC FINGER HOMEOBOX PROTEIN
HS14084EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
HS14085SOMETHING ABOUT SILENCING PROTEIN 10-RELATED
HS14086CCAAT/ENHANCER BINDING PROTEIN
HS14087SOLUTE CARRIER FAMILY 22 MEMBER
HS14088MYOSIN HEAVY CHAIN, NON-MUSCLE
HS14089
HS14090RECEPTOR ACTIVITY MODIFYING PROTEIN RAMP
HS14091
HS14092NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
HS14093PROTEASOME MATURATION PROTEIN UMP1
HS14094MATRIX METALLOPROTEINASE
HS14095
HS14096CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS14097BEIGE/BEACH-RELATED
HS14098SOLUTE CARRIER FAMILY 35
HS14099RETINOBLASTOMA BINDING PROTEIN 8
HS14100MYELIN-ASSOCIATED NEURITE-OUTGROWTH INHIBITOR-RELATED
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