About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05550REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05551PROTEIN FAM47B
Paelopatides05552XANTHINE DEHYDROGENASE
Paelopatides05553ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05554AP ENDONUCLEASE
Paelopatides05555ENDONUCLEASE
Paelopatides05556LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides05557-
Paelopatides05558HRAS-LIKE SUPPRESSOR - RELATED
Paelopatides05559TRANSPOSON
Paelopatides05560ACROSIN-RELATED
Paelopatides05561-
Paelopatides05562-
Paelopatides05563-
Paelopatides05564RIKEN CDNA D130052B06 GENE
Paelopatides05565PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35
Paelopatides05566PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4
Paelopatides05567PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides05568OS-9-RELATED
Paelopatides05571-
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