About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05467RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides05468MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides05469-
Paelopatides05470-
Paelopatides05471-
Paelopatides05472REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05473CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05474HEME-BINDING MONOOXYGENASE FAMILY
Paelopatides05475CYTOCHROME P450 508A4-RELATED
Paelopatides05476ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides05477PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05478PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05479PROPERDIN
Paelopatides05481TRANSPOSASE, PUTATIVE-RELATED
Paelopatides05482CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05483NICOTINATE PHOSPHORIBOSYLTRANSFERASE
Paelopatides05484NICOTINATE PHOSPHORIBOSYLTRANSFERASE
Paelopatides05485-
Paelopatides05486GAG-RELATED PROTEIN
Paelopatides05487RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
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