About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05508UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED
Paelopatides05509UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED
Paelopatides05512GAMMA-SECRETASE SUBUNIT APH-1
Paelopatides05513FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides05514S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides05515-
Paelopatides05516CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides05517PATCHED-RELATED
Paelopatides05518PATCHED-RELATED
Paelopatides05519RAB GDP-DISSOCIATION INHIBITOR
Paelopatides05520UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides05521FGF RECEPTOR ACTIVATING PROTEIN 1
Paelopatides05522PRE-MRNA CLEAVAGE COMPLEX II
Paelopatides05523WW DOMAIN BINDING PROTEIN 4
Paelopatides05524GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN
Paelopatides05525PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05526FATTY ACID SYNTHASE
Paelopatides05527RETROTRANSPOSON
Paelopatides05528-
Paelopatides05529CXC DOMAIN-CONTAINING PROTEIN-RELATED
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