About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05572ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides05573DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides05574L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides05575-
Paelopatides05576ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05577-
Paelopatides05578SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides05579-
Paelopatides05580STAR-RELATED LIPID TRANSFER PROTEIN 9
Paelopatides05581MEMBRANE PROTEIN CH1 RELATED
Paelopatides05582MEMBRANE PROTEIN CH1 RELATED
Paelopatides05583EPM2A-INTERACTING PROTEIN 1
Paelopatides05584CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05585LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 3
Paelopatides05586-
Paelopatides05587GLUTATHIONE S-TRANSFERASE
Paelopatides05588ET TRANSLATION PRODUCT-RELATED
Paelopatides05589CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05590-
Paelopatides05593-
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