About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05447ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05448-
Paelopatides05449SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides05450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05451CYTOCHROME P450 508A4-RELATED
Paelopatides05452CYTOCHROME P450 508A4-RELATED
Paelopatides05453PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS X PROTEIN
Paelopatides05454NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF
Paelopatides05455AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN
Paelopatides05456SPONDIN
Paelopatides05457-
Paelopatides05458MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
Paelopatides05459TRANSMEMBRANE PROTEIN 98
Paelopatides05460TUBERIN
Paelopatides05461TUBERIN
Paelopatides05462PARTNER OF SLD5
Paelopatides05463PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05464-
Paelopatides05465LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides05466RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
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