About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05614-
Paelopatides05615UNCHARACTERIZED
Paelopatides05616TROPONIN C-AKIN-1 PROTEIN
Paelopatides05617MYOSIN LIGHT CHAIN 1, 3
Paelopatides05618ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05619OS05G0310600 PROTEIN
Paelopatides05623ZINC FINGER PROTEIN
Paelopatides05624SI:CH211-108C17.2-RELATED-RELATED
Paelopatides05625-
Paelopatides05626UNCHARACTERIZED
Paelopatides05627RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides05628TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides05629-
Paelopatides05630REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05631SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05632FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides05633FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides05634-
Paelopatides05635FLAVIN MONOAMINE OXIDASE
Paelopatides05636ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
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