About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56658NUDIX HYDROLASE
Paelopatides56659-
Paelopatides56660NUDIX HYDROLASE
Paelopatides56661-
Paelopatides56662-
Paelopatides56663FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides56664ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides56665ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides56666NADPH OXIDASE
Paelopatides56667ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides56668-
Paelopatides56669-
Paelopatides56670ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides56671MORTALITY FACTOR 4-LIKE PROTEIN
Paelopatides56672-
Paelopatides56673MORTALITY FACTOR 4-LIKE PROTEIN
Paelopatides56674-
Paelopatides56675SI:CH211-108C17.2-RELATED-RELATED
Paelopatides56676ZGC:195170
Paelopatides56677NACHT DOMAIN-CONTAINING PROTEIN
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