About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides567184-NITROPHENYLPHOSPHATASE-RELATED
Paelopatides56719GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides56720KICSTOR COMPLEX PROTEIN SZT2
Paelopatides56721-
Paelopatides56722-
Paelopatides56723-
Paelopatides56724N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Paelopatides56725-
Paelopatides56726-
Paelopatides56727-
Paelopatides56728SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides56729PROTEIN CBG26694
Paelopatides56730CODANIN-1
Paelopatides56731APOPTOSIS REGULATORY PROTEIN SIVA
Paelopatides56732-
Paelopatides56733MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A
Paelopatides56734ROLLING PEBBLES, ISOFORM B
Paelopatides56735ROLLING PEBBLES, ISOFORM B
Paelopatides56736REVERSE TRANSCRIPTASES
Paelopatides56737-
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