About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56698PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides56699REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides56700-
Paelopatides56701-
Paelopatides56702IP13529P
Paelopatides56703NXPE FAMILY MEMBER
Paelopatides56704-
Paelopatides56705TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides56706-
Paelopatides56707PROTEIN CBG26694
Paelopatides56708-
Paelopatides56709DNA REPAIR PROTEIN REV1
Paelopatides56710-
Paelopatides56711DNA REPAIR PROTEIN REV1
Paelopatides56712DNA REPAIR PROTEIN REV1
Paelopatides56713-
Paelopatides56714DNA REPAIR PROTEIN REV1
Paelopatides56715DNA REPAIR PROTEIN REV1
Paelopatides56716PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides56717B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
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