About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54877ORIGIN RECOGNITION COMPLEX SUBUNIT 3
Paelopatides54878REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54879ALPHA-TECTORIN-RELATED
Paelopatides54880-
Paelopatides54881ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides54882-
Paelopatides54883-
Paelopatides54884-
Paelopatides54885CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54886SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54887BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1
Paelopatides54888N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides54889POL PROTEIN
Paelopatides54890ENDONUCLEASE-RELATED
Paelopatides54891ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54892REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54893-
Paelopatides54894MATRIX METALLOPROTEINASE
Paelopatides54895BAND 7 PROTEIN-RELATED
Paelopatides54896PROTEIN CBG26694
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