About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54897PROTEIN CBG26694
Paelopatides54898CARBOHYDRATE SULFOTRANSFERASE
Paelopatides54899-
Paelopatides54900HIGH MOBILITY GROUP PROTEIN DSP1
Paelopatides54901ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides54902ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides54903-
Paelopatides54904ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54905INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides54906RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides54907-
Paelopatides54908-
Paelopatides54909RETROTRANSPOSON
Paelopatides54910RETROTRANSPOSON
Paelopatides54911-
Paelopatides54912ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides54913-
Paelopatides54914-
Paelopatides54915SLR5058 PROTEIN
Paelopatides54916-
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