About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54917-
Paelopatides54918-
Paelopatides54919PROTEIN CBG26694
Paelopatides54920ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54921ENZYMATIC POLYPROTEIN-RELATED
Paelopatides54922POL PROTEIN
Paelopatides54923-
Paelopatides54924RAB6A-GEF COMPLEX PARTNER PROTEIN 1
Paelopatides54925PROTEIN CBG26694
Paelopatides54926MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides54927FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54928EPM2A-INTERACTING PROTEIN 1
Paelopatides54929EPM2A-INTERACTING PROTEIN 1
Paelopatides54930SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides54931TYROSINE-PROTEIN KINASE
Paelopatides54932TORSIN-1A-INTERACTING PROTEIN
Paelopatides54933COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides54934SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54935SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54936ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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