About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54980G-PROTEIN COUPLED RECEPTOR
Paelopatides54981DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
Paelopatides54982DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
Paelopatides54983PROTEIN CBG26694
Paelopatides54984ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54985DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
Paelopatides54986DEOXYRIBONUCLEASE TATDN2-RELATED
Paelopatides54987ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54988ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54989REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54990NUCLEAR PROTEIN MDM1
Paelopatides54991DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides54992DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides54993DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides54994DYNEIN HEAVY CHAIN
Paelopatides54995PROTEIN CBG26694
Paelopatides54996-
Paelopatides54997-
Paelopatides54998-
Paelopatides54999PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
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