About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides550414.1 G PROTEIN
Paelopatides550424.1 G PROTEIN
Paelopatides55043PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55044LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
Paelopatides55045ADP RIBOSYLATION FACTOR-RELATED
Paelopatides55046-
Paelopatides55047-
Paelopatides55048INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides55049NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Paelopatides55050-
Paelopatides55051-
Paelopatides55052NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Paelopatides55053ENDO-ALPHA-1,2-MANNOSIDASE
Paelopatides55054ARGINYL-TRNA SYNTHETASE
Paelopatides55055NEPHRIN
Paelopatides55056-
Paelopatides55057SI:CH211-196P9.1-RELATED
Paelopatides55058IP13529P
Paelopatides55059-
Paelopatides55060INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS
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