About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55061ANKYRIN REPEAT PROTEIN
Paelopatides55062-
Paelopatides55063-
Paelopatides55064-
Paelopatides55065TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides55066HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY
Paelopatides55067E3 UFM1-PROTEIN LIGASE 1
Paelopatides55068ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides55069-
Paelopatides55070E3 UFM1-PROTEIN LIGASE 1
Paelopatides55071FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides55072PROTEIN CBG26694
Paelopatides55073CYTOCHROME P450 FAMILY 4
Paelopatides55074-
Paelopatides55075-
Paelopatides55076PROTEIN CBG26694
Paelopatides55077PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55078ENDONUCLEASE-RELATED
Paelopatides55079SUPEROXIDE DISMUTASE 2
Paelopatides55080WILMS' TUMOR 1-ASSOCIATING PROTEIN
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