About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55121ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides55123-
Paelopatides55124-
Paelopatides55125-
Paelopatides55126-
Paelopatides55127MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides55128-
Paelopatides55129PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55130CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55131-
Paelopatides55132REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55133REVERSE TRANSCRIPTASES
Paelopatides55134-
Paelopatides55135CYTOCHROME P450 20A1
Paelopatides55136-
Paelopatides55137CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55138ACTIN
Paelopatides55139REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55140NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides55141TYROSINE-PROTEIN KINASE
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