About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55162-
Paelopatides55163HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Paelopatides55164-
Paelopatides55165REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55166-
Paelopatides55167-
Paelopatides55168SEC24-RELATED PROTEIN
Paelopatides55169-
Paelopatides55170DNAJ HOMOLOG SUBFAMILY C MEMBER 22
Paelopatides55171-
Paelopatides55172GUSTATORY RECEPTOR
Paelopatides55173AHD DOMAIN-CONTAINING PROTEIN
Paelopatides55174RIBOSOMAL PROTEIN S19P FAMILY MEMBER
Paelopatides55175NADH DEHYDROGENASE
Paelopatides55176-
Paelopatides55177MUCIN-22
Paelopatides55178SH3 DOMAIN-CONTAINING
Paelopatides55179COMPLEMENT FACTOR H-RELATED
Paelopatides55180-
Paelopatides55181PROTEIN CBG26694
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