About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55222GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
Paelopatides55223REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55224REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55225-
Paelopatides55226FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides55227-
Paelopatides55228NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN
Paelopatides55229CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55230POL PROTEIN
Paelopatides55231PROTEIN CBG26694
Paelopatides55232NETRIN RECEPTOR UNC5
Paelopatides55233REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55234-
Paelopatides55235INTEGRIN ALPHA
Paelopatides55236ARMADILLO-LIKE HELICAL DOMAIN-CONTAINING PROTEIN 2
Paelopatides55237-
Paelopatides55238SORTING NEXIN
Paelopatides55239SORTING NEXIN
Paelopatides55240ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides55241PROTEIN CBG26694
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