About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55202RING FINGER DOMAIN-CONTAINING
Paelopatides55203-
Paelopatides55204PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55205POLY A POLYMERASE CID PAP -RELATED
Paelopatides55206-
Paelopatides55207PDZ DOMAIN-CONTAINING PROTEIN 8
Paelopatides55208-
Paelopatides55209REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55210-
Paelopatides55211-
Paelopatides55212UNCHARACTERIZED
Paelopatides55213-
Paelopatides55214BUCENTAUR RELATED
Paelopatides55215-
Paelopatides55216SI:CH211-67E16.11
Paelopatides55217VACUOLAR PROTEIN SORTING VPS41
Paelopatides55218-
Paelopatides55219SEC10
Paelopatides55220-
Paelopatides55221GLUTAREDOXIN FAMILY MEMBER
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