About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55284KICSTOR COMPLEX PROTEIN SZT2
Paelopatides55285-
Paelopatides55286-
Paelopatides55287-
Paelopatides55288-
Paelopatides55289-
Paelopatides55290-
Paelopatides55291ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides55292PROTEIN CBG26694
Paelopatides55293PROTEIN CBG26694
Paelopatides55294CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides55295-
Paelopatides55296MEMBRANE-ANCHORED JUNCTION PROTEIN MAJIN
Paelopatides55297DESUMOYLATING ISOPEPTIDASE
Paelopatides55298E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
Paelopatides55299PROTEIN, PUTATIVE-RELATED
Paelopatides55300CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides55301CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55302TRANSPOSON
Paelopatides55303N-LYSINE METHYLTRANSFERASE KMT5A
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