About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54757MYOSIN HEAVY CHAIN, NON-MUSCLE
Paelopatides54758-
Paelopatides54759PROPERDIN
Paelopatides54760ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54761MALE STERILITY PROTEIN 2-RELATED
Paelopatides54762-
Paelopatides54763-
Paelopatides54764-
Paelopatides54765-
Paelopatides54766DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER
Paelopatides54767FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54768SERINE/THREONINE-PROTEIN KINASE 17
Paelopatides54769MYD88
Paelopatides54770REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54771-
Paelopatides54772TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides54773-
Paelopatides54774NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides54775PUTATIVE-RELATED
Paelopatides54776-
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