About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54655FTP DOMAIN-CONTAINING PROTEIN
Paelopatides54656CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54657HYPOTHETICAL CYTOSOLIC PROTEIN
Paelopatides54658REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54659ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides54660NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides54661SH2B ADAPTER PROTEIN
Paelopatides54662SH2B ADAPTER PROTEIN
Paelopatides54663AP1 GAMMA SUBUNIT BINDING PROTEIN 1
Paelopatides54664IP13529P
Paelopatides54665-
Paelopatides54666PLEXIN
Paelopatides54667PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides54668UNCHARACTERIZED
Paelopatides54669AGAP001331-PA-RELATED
Paelopatides54670-
Paelopatides54671PHOSPHOLIPASE A2 FAMILY MEMBER
Paelopatides54672-
Paelopatides54673SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
Paelopatides54674GUANYLATE KINASE-RELATED
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