About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54551ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54552-
Paelopatides54553-
Paelopatides545542-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
Paelopatides54555-
Paelopatides54556-
Paelopatides54557BONUS, ISOFORM C-RELATED
Paelopatides54558BILIVERDIN REDUCTASE A
Paelopatides54559BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides54560TRANSMEMBRANE PROTEIN 199
Paelopatides54561VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1
Paelopatides54562OROTATE PHOSPHORIBOSYLTRANSFERASE
Paelopatides54563TUBULIN POLYGLUTAMYLASE
Paelopatides54564TRAF-LIKE SUPERFAMILY PROTEIN
Paelopatides54565RIBOPHORIN I
Paelopatides54566ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54567ENDONUCLEASE-RELATED
Paelopatides54568ENZYMATIC POLYPROTEIN-RELATED
Paelopatides54569-
Paelopatides54570S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
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