About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54421-
Paelopatides54422INTIMAL THICKNESS RECEPTOR-RELATED
Paelopatides54423U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14
Paelopatides54424U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14
Paelopatides54425U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14
Paelopatides54426UNCHARACTERIZED DUF1167
Paelopatides54428EPM2A-INTERACTING PROTEIN 1
Paelopatides54429UNCHARACTERIZED DUF1167
Paelopatides54430-
Paelopatides54431VACUOLAR PROTON ATPASES
Paelopatides54432-
Paelopatides54433TYROSINE-PROTEIN KINASE
Paelopatides54434-
Paelopatides54435PROTEIN CBG26694
Paelopatides54436-
Paelopatides54439ENDONUCLEASE-RELATED
Paelopatides54440BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides54441EPM2A-INTERACTING PROTEIN 1
Paelopatides54442INORGANIC PYROPHOSPHATASE
Paelopatides54443EPM2A-INTERACTING PROTEIN 1
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