About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54401-
Paelopatides54402DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11
Paelopatides54403PROTEIN CBG18333
Paelopatides54404-
Paelopatides54405TRANSPOSON
Paelopatides54406-
Paelopatides54407SMAD
Paelopatides54408-
Paelopatides54409ADP-RIBOSYLGLYCOHYDROLASE
Paelopatides54410-
Paelopatides54411D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Paelopatides54412D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Paelopatides54413-
Paelopatides54414PROTEIN CBG26694
Paelopatides54415-
Paelopatides54416METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides54417CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54418-
Paelopatides54419SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides54420SOLUTE CARRIER FAMILY 22 MEMBER
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