About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54265-
Paelopatides54266IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides54267LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides54270MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides54271MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides54272RAN BINDING PROTEIN
Paelopatides54273-
Paelopatides54274-
Paelopatides54275ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54276-
Paelopatides54277TYROSINE-PROTEIN KINASE
Paelopatides54278FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54279-
Paelopatides54280ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54281CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54282-
Paelopatides54283-
Paelopatides54284-
Paelopatides54285DESTABILASE-RELATED
Paelopatides54286-
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