About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54141C-TYPE LECTIN SUPERFAMILY MEMBER
Paelopatides54142-
Paelopatides54143REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54144REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54145-
Paelopatides54146SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
Paelopatides54148EPM2A-INTERACTING PROTEIN 1
Paelopatides54149SI:CH211-108C17.2-RELATED-RELATED
Paelopatides54150-
Paelopatides54152SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides54153-
Paelopatides54154TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides54155ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54156POL PROTEIN
Paelopatides54157NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
Paelopatides54158-
Paelopatides54159-
Paelopatides54160NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
Paelopatides54161ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
Paelopatides54162-
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