About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54038-
Paelopatides54039-
Paelopatides54040-
Paelopatides54041-
Paelopatides54042GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2
Paelopatides54043-
Paelopatides54044-
Paelopatides54045PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides54046-
Paelopatides54047-
Paelopatides54048REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54049REVERSE TRANSCRIPTASES
Paelopatides54050PROTEIN CBG26694
Paelopatides54051ENDONUCLEASE-RELATED
Paelopatides54052FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54053TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9
Paelopatides54054INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides54057FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54058FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54059-
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