About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53974-
Paelopatides53975LYSYL OXIDASE-LIKE-RELATED
Paelopatides53978-
Paelopatides53979F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53980ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53981F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53982BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides53983ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53984-
Paelopatides53985NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides53986POL PROTEIN
Paelopatides53987ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53988ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53989POL PROTEIN
Paelopatides53990ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53991ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53992ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53993ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53994TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides53995-
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