About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53933NITRIC OXIDE SYNTHASE-RELATED
Paelopatides53934FORMIN-LIKE PROTEIN
Paelopatides53935NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides53936-
Paelopatides53937BIOTINIDASE-RELATED
Paelopatides53938-
Paelopatides53939PROTEIN CBG26694
Paelopatides53940NETRIN RECEPTOR UNC5
Paelopatides53941SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides53942SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides53943ZINC FINGER PROTEIN 106
Paelopatides53944-
Paelopatides53945-
Paelopatides53946-
Paelopatides53947REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53948SYNAPTOSOMAL ASSOCIATED PROTEIN
Paelopatides53949HELICASE
Paelopatides53950-
Paelopatides53951SYNAPTOSOMAL ASSOCIATED PROTEIN
Paelopatides53952-
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