About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54101-
Paelopatides54102EPM2A-INTERACTING PROTEIN 1
Paelopatides54103CARNITINE O-ACYLTRANSFERASE
Paelopatides54104CARNITINE O-ACYLTRANSFERASE
Paelopatides54105-
Paelopatides54106ESTERASE OVCA2
Paelopatides54107ZGC:101858
Paelopatides54108TRANSCRIPTION ELONGATION REGULATOR 1
Paelopatides54109PRE-MRNA-PROCESSING PROTEIN PRP40
Paelopatides54110-
Paelopatides54111TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides54112-
Paelopatides54113TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides54114REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54115TYROSINE-PROTEIN KINASE
Paelopatides54116MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides54117TAX1 BINDING PROTEIN-RELATED
Paelopatides54118-
Paelopatides54119-
Paelopatides54120MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F
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