About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54163-
Paelopatides54164-
Paelopatides54165-
Paelopatides54167HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1
Paelopatides54168VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8
Paelopatides54169CADHERIN-23
Paelopatides54170CADHERIN-23
Paelopatides54171PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides54172DESMOGLEIN FAMILY MEMBER
Paelopatides54173PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides54174-
Paelopatides54175RETROTRANSPOSON
Paelopatides54176RETROTRANSPOSON
Paelopatides54177PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides54178-
Paelopatides54179TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides54180ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54181CYTOCHROME P450 508A4-RELATED
Paelopatides54182PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides54183GH04942P
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