About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54307REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54308ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides54309SOLUTE CARRIER FAMILY 39
Paelopatides54310PATHOGENESIS-RELATED FAMILY PROTEIN
Paelopatides54311ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54312ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54313FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54314PROTEIN CBG26694
Paelopatides54315GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides54316REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54317BUCENTAUR RELATED
Paelopatides54318-
Paelopatides54319FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54320ENDONUCLEASE-RELATED
Paelopatides54321-
Paelopatides54322-
Paelopatides54323-
Paelopatides54324CLASP
Paelopatides54325-
Paelopatides54326CLASP
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