About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54245ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54246ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54247CRUMBS FAMILY MEMBER
Paelopatides54248CRUMBS FAMILY MEMBER
Paelopatides54249CRUMBS FAMILY MEMBER
Paelopatides54250NUCLEOTIDE KINASE
Paelopatides54251HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
Paelopatides54252E3 UBIQUITIN-PROTEIN LIGASE PRAJA
Paelopatides54253CALRETICULIN AND CALNEXIN
Paelopatides54254-
Paelopatides54255PROMININ PROM PROTEIN
Paelopatides54256PROMININ PROM PROTEIN
Paelopatides54257TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
Paelopatides54258-
Paelopatides54259WD40 REPEAT DOMAIN 95
Paelopatides54260REVERSE TRANSCRIPTASES
Paelopatides54261WD40 REPEAT DOMAIN 95
Paelopatides54262BUCENTAUR RELATED
Paelopatides54263WD40 REPEAT DOMAIN 95
Paelopatides54264-
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