About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54287UNCHARACTERIZED
Paelopatides54288UNCHARACTERIZED
Paelopatides54289-
Paelopatides54290DRAB5-RELATED
Paelopatides54291-
Paelopatides54292LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
Paelopatides54293ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54294-
Paelopatides54295ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54296RETROTRANSPOSON
Paelopatides54297RETROTRANSPOSON
Paelopatides54298RETROTRANSPOSON
Paelopatides54299PROTEIN CBG26694
Paelopatides54300BAT4 PROTEIN-RELATED
Paelopatides54301PROTEIN CBG26694
Paelopatides54302DOM-3 RELATED
Paelopatides54303REVERSE TRANSCRIPTASES
Paelopatides54304NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
Paelopatides54305REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54306PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
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